mapsolver version 3.2.0 Search Results


mapsolver software  (OpGen Inc)
90
OpGen Inc mapsolver software
Genomic comparison. A. The K. pneumoniae JHCK1, VA 360, and 1.53 optical maps and the restriction maps of K. pneumoniae strains NTUH-K2044, KCTC 2242, and MGH 78578 AflII obtained in silico were compared using the <t>MapSolver</t> 3.2.0 software. The blue and white regions represent matching and non-matching DNA fragments, respectively. The genomic comparison was done between strains JHCK1, 1.53, and MGH 78578 vs. strains VA360, KCTC 2242, and NTUH-K2044, a combination that maximized the detection of the HHZ region among all strains using the default settings of MapSolver v.3.2.0. Vertical lines represent AflII restriction sites. B. Zoom-in the HHZ region. C. Synteny among K. pneumoniae MGH 78578, KCTC 2242, and NTUH-K2044 strains at the HHZ regions. The genetic maps and comparison have been generated using the ACT [12] to visualize the Blastn output. Colinear regions are represented in red, colinear regions that have been inverted are represented in blue, and deletions/insertions are represented in white. The HHZs have been colored yellow in MGH 78578, KCTC 2242 and NTUH-K2044 strains, the coordinate numbers are 2648600..2807698, 3122007.. 3313398 and 3356452..3613107 respectively.
Mapsolver Software, supplied by OpGen Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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wgms  (OpGen Inc)
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OpGen Inc wgms
Genomic comparison. A. The K. pneumoniae JHCK1, VA 360, and 1.53 optical maps and the restriction maps of K. pneumoniae strains NTUH-K2044, KCTC 2242, and MGH 78578 AflII obtained in silico were compared using the <t>MapSolver</t> 3.2.0 software. The blue and white regions represent matching and non-matching DNA fragments, respectively. The genomic comparison was done between strains JHCK1, 1.53, and MGH 78578 vs. strains VA360, KCTC 2242, and NTUH-K2044, a combination that maximized the detection of the HHZ region among all strains using the default settings of MapSolver v.3.2.0. Vertical lines represent AflII restriction sites. B. Zoom-in the HHZ region. C. Synteny among K. pneumoniae MGH 78578, KCTC 2242, and NTUH-K2044 strains at the HHZ regions. The genetic maps and comparison have been generated using the ACT [12] to visualize the Blastn output. Colinear regions are represented in red, colinear regions that have been inverted are represented in blue, and deletions/insertions are represented in white. The HHZs have been colored yellow in MGH 78578, KCTC 2242 and NTUH-K2044 strains, the coordinate numbers are 2648600..2807698, 3122007.. 3313398 and 3356452..3613107 respectively.
Wgms, supplied by OpGen Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/wgms/product/OpGen Inc
Average 90 stars, based on 1 article reviews
wgms - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier

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Genomic comparison. A. The K. pneumoniae JHCK1, VA 360, and 1.53 optical maps and the restriction maps of K. pneumoniae strains NTUH-K2044, KCTC 2242, and MGH 78578 AflII obtained in silico were compared using the MapSolver 3.2.0 software. The blue and white regions represent matching and non-matching DNA fragments, respectively. The genomic comparison was done between strains JHCK1, 1.53, and MGH 78578 vs. strains VA360, KCTC 2242, and NTUH-K2044, a combination that maximized the detection of the HHZ region among all strains using the default settings of MapSolver v.3.2.0. Vertical lines represent AflII restriction sites. B. Zoom-in the HHZ region. C. Synteny among K. pneumoniae MGH 78578, KCTC 2242, and NTUH-K2044 strains at the HHZ regions. The genetic maps and comparison have been generated using the ACT [12] to visualize the Blastn output. Colinear regions are represented in red, colinear regions that have been inverted are represented in blue, and deletions/insertions are represented in white. The HHZs have been colored yellow in MGH 78578, KCTC 2242 and NTUH-K2044 strains, the coordinate numbers are 2648600..2807698, 3122007.. 3313398 and 3356452..3613107 respectively.

Journal: Clinical Microbiology and Infection

Article Title: Multidrug resistant (MDR) Klebsiella pneumoniae clinical isolates: a zone of high heterogeneity (HHZ) as a tool for epidemiological studies

doi: 10.1111/j.1469-0691.2012.03886.x

Figure Lengend Snippet: Genomic comparison. A. The K. pneumoniae JHCK1, VA 360, and 1.53 optical maps and the restriction maps of K. pneumoniae strains NTUH-K2044, KCTC 2242, and MGH 78578 AflII obtained in silico were compared using the MapSolver 3.2.0 software. The blue and white regions represent matching and non-matching DNA fragments, respectively. The genomic comparison was done between strains JHCK1, 1.53, and MGH 78578 vs. strains VA360, KCTC 2242, and NTUH-K2044, a combination that maximized the detection of the HHZ region among all strains using the default settings of MapSolver v.3.2.0. Vertical lines represent AflII restriction sites. B. Zoom-in the HHZ region. C. Synteny among K. pneumoniae MGH 78578, KCTC 2242, and NTUH-K2044 strains at the HHZ regions. The genetic maps and comparison have been generated using the ACT [12] to visualize the Blastn output. Colinear regions are represented in red, colinear regions that have been inverted are represented in blue, and deletions/insertions are represented in white. The HHZs have been colored yellow in MGH 78578, KCTC 2242 and NTUH-K2044 strains, the coordinate numbers are 2648600..2807698, 3122007.. 3313398 and 3356452..3613107 respectively.

Article Snippet: Analyses were done comparing the Afl II restriction maps using the MapSolver software (version 3.2.0; OpGen Technologies, Inc.).

Techniques: Comparison, In Silico, Software, Generated